PUBLICATIONS

• Lu TP, Lai LC, Lin BI, Chen LH, Hsiao TH, Liber HL, Cook JA, Mitchell JB, Tsai MH, Chuang EY.
  Distinct signaling pathways after higher or lower doses of radiation in three closely related human
  lymphoblast cell lines. Int J Radiat Oncol Biol Phys. 2010 Jan 1;76(1):212-9.

• Hsiao TH, Lin CH, Lee TT, Cheng JY, Wei PK, Chuang EY, Peck K., Verifying expressed transcript
  variants by detecting and assembling stretches of consecutive exons, Nucleic Acids Res., 2010
  Nov;38(20):e187.

• Xiao Y, Hsiao TH, Suresh U, Chen HH, Wu X, Wolf ES, Chen Y, A Novel Significance Score for Gene
  Selection and Ranking, Bioinformatics, Epub 2012 Feb 9.

• Hsu FH, Serpedin E, Hsiao TH, Bishop A, Dougherty E, Chen Y. Reducing confounding and
  suppression effects in TCGA data: an integrated analysis of chemotherapy response in ovarian cancer.
  BMC Genomics, 2012 Oct; 13(Suppl 6):S13.

• Wang CY, Hsiao TH, Chu LH, Lin YL, Huang JL, Chen CH, Peck K. Unraveling virus identity by
  detection of depleted probes with capillary electrophoresis. Anal Chim Acta. 2012 Jul 13;734:88-92.

• Hsiao TH, Chen HH, Lu JY, Lin PY, Keller C, Comerford S, Tomlinson G, and Chen Y. Utilizing
  Signature-score to Identify Oncogenic Pathways of Cholangiocarcinoma. Translational Cancer Research,
  2013;2(1):6-17.

• Flores M, Hsiao TH (co-first author), Chiu YC, Chunag EY, Huang YF, Chen Y. Gene Regulation,
  Modulation and Their Applications in Gene Expression Data Analysis. Advances in Bioinformatics, Epub
  2013 Mar 13.

• Sanchez-Diaz PC, Hsiao TH (co-first author), Chen HH, Tomlinson GE, Chen Y, and Hung JY. De-
  Regulated MicroRNAs in Pediatric Cancer Stem Cells Target Pathways Involved in Cell Proliferation, Cell
  Cycle and Development. PLoS One. 2013 Apr 17;8(4):e61622.

• Du L, Zhao Z, Ma X, Hsiao TH, Chen Y, Young E, Suraokar M, Wistuba I, Minna JD, and Pertsemlidis
  A. miR-93-directed down-regulation of DAB2 defines a novel oncogenic pathway in lung cancer.
  Oncogene 2013 Sep 16.

• u PY, Hsu HK, Lan X, Juan L, Yan PS, Labanowska J, Heerema N, Hsiao TH, Chiu YC, Chen Y, Liu
  YL, Li L, Li R, Thompson IM, Nephew KP, Sharp ZD, Kirma NB, Jin VX, and Huang T. Amplification
  of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in
  breast cancer . Cancer Cell. 2013 Aug 12;24(2):197-212.

• Hsiao TH, Chen HH, Roessler S, Wang XW, and Chen Y. Identification of Genomic Functional Hotspots
  with Copy Number Alteration in Liver Cancer. EURASIP Journal on Bioinformatics and Systems Biology
  2013 Oct 25;2013(1):14.

• Zhao Z, Ma X, Hsiao TH, Lin G, Kosti A, Yu X, Suresh U, Chen Y, Tomlinson G, Pertsemlidis A, and
  Du L. (2014). A high-content morphological screen identifies novel microRNAs that regulate
  neuroblastoma cell differentiation. Oncotarget, 5.

• Wang WL, Huang HC, Kao SH, Hsu YC, Wang YT, Li KC, Chen YJ, Yu SL, Wang SP, Hsiao TH, Yang
  PC, and Hong TM. Slug is temporally regulated by cyclin E in cell cycle and controls genome stability.
  Oncogene. 2014 Mar 24.

• Wang LK, Hsiao TH, Hong TM, Chen HY, Kao SH, Wang WL, Yu SL, Yang PC, and Lin CW.
  MicroRNA-133a suppresses multiple oncogenic membrane receptors and cell invasion in non-small cell
  lung carcinoma. PLoS One. 2014 May 9;9(5):e96765.
  CONFERENCE PAPERS (Peer-reviewed, Oral Presentation)

• Hsiao TH, Chen HH, Sanchez-Diaz PC, Hung JY, Huang Y, Chen Y. Gene Sets Enrichment
  Analysis of miRNA Expression Profile. IEEE Bioinformatics and Biomedicine 2011 (BIBM
  2011), Atlanta, GA, Nov. 2011.

• en HH, Hsiao TH, Keller C, Chen Y. S-score: a Novel Scoring Method of Gene Signatures
  for Molecular Classification. IEEE Genomics Signal Processing and Statistics 2011 (GENSIPS
  2011), San Antonio, TX, Dec. 2011.

• u FH, Serpedin E, Hsiao TH, Bishop A, Dougherty E, Chen Y. Identifying Genes Associated
  with Chemotherapy Response in Ovarian Carcinomas Based on DNA Copy Number and
  Expression Profiles. IEEE Genomics Signal Processing and Statistics 2011 (GENSIPS 2011),
  San Antonio, TX, Dec. 2011.

• siao TH, Chen HH, Chen YH, Chuang EY, Chen Y. Using Gene Sets to Identify Putative
  Drugs for Breast Cancer. IEEE Bioinformatics and Biomedicine 2012 (BIBM 2012),
  Philadelphia, PN, Oct. 2012.

• Hsiao TH, Chen HH, Chen Y. Identification of Spatial functional Segments in Human Genome
  to Explore the Copy Number Alternations of Liver Cancers. IEEE Genomics Signal Processing
  and Statistics 2012 (GENSIPS 2012), Washington, D.C., Dec. 2012.

• Zhang L, Liu H, Hsiao TH, Chen Y, Huang YF. An investigation of clinical outcome prediction
  from integrative genomic profiles in ovarian cancer. IEEE Genomics Signal Processing and
  Statistics 2012 (GENSIPS 2012), Washington, D.C., Dec. 2012.

• Chiu YC, Hsiao TH (co-first author), Chuang EY, Chen Y. Identification of Optimal
  Conditions for Competing Endogenous RNA Regulation in Glioblastoma Multiforme. IEEE
  Genomics Signal Processing and Statistics 2013 (GENSIPS 2013) Houston, Texas, Nov. 2013.

• Chiu YC, Hsiao TH (co-first author), Chuang EY, Chen Y. Modeling Competing Endogenous
  RNA Regulatory Networks in Glioblastoma Multiforme. IEEE Bioinformatics and Biomedicine
  2013 (BIBM 2013), Shanghai, China, Dec. 2013.

• Hsu YC, Chiu YC, Chen Y, Chuang EY, and Hsiao TH (corresponding author). A gene set
  approach to analyze copy number alterations profiles of breast cancer. International Conference
  on Intelligent Biology and Medicine (ICIBM 2104), San Antonio, Texas, Dec 2014.

• Chiu YC, Wu CT, Hsiao TH, Lai YP, Hsiao CK, Chen Y ,and Eric Y. Chuang. Co-modulation
  analysis of gene regulation in breast cancer reveals complex interplay between ESR1 and ERBB2
  genes. International Conference on Intelligent Biology and Medicine (ICIBM 2104), San Antonio,
  Texas, Dec 2014.